Feature updates and improvements​

Bug fixes​

Pipelines​

• Fixed the Nextflow syntax parser v2 toggle to seed its state from the saved launch configuration.
• Fixed the workflow launch API response to include the syntaxParser field.
• Fixed the pipeline edit form to persist a custom schema added for the first time.
• Removed the lineage setting from the launch form's essential fields so users with the Launcher role can no longer override it.

Upgrade notes​

No breaking changes. Standard upgrade procedure applies.

Feature updates and improvements​

Azure​

• Updated default Azure Batch pool image to Ubuntu 24.04 by @pditommaso in 114d0e4c

General​

• Pinned rnaseq-nf to v2.3 in Azure validation script by @pditommaso in 8f7e5780

Bug fixes​

S3​

• Fixed S3FileSystemProvider.newInputStream() draining full object on close by @jorgee in #7046

General​

• Fixed world-readable seqera-auth.config credential file by @arnaualcazar in #7182
• Fixed LogsCheckpoint thread interrupt race condition by @pditommaso in #6939

Dependencies​

• Bumped nf-amazon@3.4.5 by @pditommaso in b9074b2d
• Bumped nf-tower@1.17.7 by @pditommaso in da09f092
• Bumped nf-azure@1.20.3 by @pditommaso in 1e000afe

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.6

Feature updates and improvements​

Access control​

• Enabled GitHub App credentials for all workspaces.

Compute environments​

• Added security group name search to AWS drop-downs.

Pipelines​

• Surfaced launch-time settings, including profiles and syntax parser, in the run config tab.

Bug fixes​

Data explorer​

• Fixed IGV index file handling by presigning indexURLs independently.

Pipelines​

• Fixed the Nextflow syntax parser v2 toggle to seed from the saved launch config.
• Included syntaxParser in the workflow launch API response.
• Cleared stale main script launch errors.
• Fixed the launch form to skip the lineage request in user space.

Feature updates and improvements​

Language features​

• Improved the error message when enabling types with syntax parser v1 by @jorgee in #7173

Plugins​

• Made plugin metadata prefetch resilient to registry rate limiting by @pditommaso in #7181

Fusion​

• Added support for fetching local files in FUSION_CONTAINER_CONFIG_URL by @alberto-miranda in #7142

Bug fixes​

S3​

• Fixed bucket cleanup in S3 test by @bentsherman in #7172

General​

• Fixed docs CI on Python 3.14 by upgrading Sphinx by @jorgee in #7175

Dependencies​

• Bumped nf-azure@1.22.5
• Bumped nf-google@1.27.3
• Bumped nf-k8s@1.5.4
• Bumped nf-seqera@0.20.1
• Bumped nf-tower@1.28.0
• Bumped nf-wave@1.21.0

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.3

Feature updates and improvements​

Pipelines​

• Exposed tower.launch.config.maxSize to frontend validators so launch configuration size limits stay aligned with the backend.

Bug fixes​

Pipelines​

• Added frontend validation of paramsText against its JSON-serialized size to align launch parameter limits with backend submission constraints.
• Added missing metadata, pipeline versioning, and data lineage fields to the workflow launch form summary.
• Fixed the workflow launch payload to always send lineage.enabled so the data lineage toggle setting persists correctly.

General​

• Fixed the workspace switcher to keep the search input focused during arrow-key navigation.
• Fixed background worker shutdown by draining workers before JedisPool shutdown to prevent dropped jobs.
• Fixed navigation switcher responsiveness.

Seqera Platform Enterprise version 26.1 introduces Co-Scientist for Enterprise, broader cloud credential support (AWS role-based access, Azure Entra service principal, GCP Workload Identity Federation), Nextflow data lineage in pipeline runs and Data Explorer, and a redesigned audit log experience with CSV export.

Highlights​

• Co-Scientist is now available for Enterprise deployments.
• Pipelines now support a GitHub App manifest flow for credential creation, with higher throughput than personal access tokens (PATs).
• Compute environments support descriptions and can be disabled, and Google Batch and Azure Batch have significant stability and scalability improvements.
• AWS, Azure, and GCP each gain deeper credential and identity management, including Workload Identity Federation (WIF) for Google Cloud Batch and Entra service principal support for Azure Batch.
• Nextflow data lineage is configurable and attached to pipeline runs and Data Explorer objects.
• Existing Studios can be edited, and new workspace settings for custom container registry controls and default collaboration modes provide top-down granular management.
• Datasets now support linked (URL-referenced) remotely-hosted data.
• Data Explorer adds IGV and Molstar 3D viewer for genomic and structural files, respectively.
• Audit logs have a new user interface with on-demand CSV export, configurable maximum records, and richer event context. The Admin panel exposes real-time usage metrics.

Feature updates and improvements​

Compute environments​

• Added a configurable boot disk size for Azure Batch pools.
• Added r8idn, r8idb, m8idn, and m8idb instance families to the NVMe list.

Pipelines​

• Added the Lineage ID to the Run Info page.

General​

• Introduced a panel search input and integrated it into the navigation switcher component.
• Improved workspace switch redirects to preserve the active sidebar section.

Bug fixes​

Compute environments​

• Deduplicated the compute environment entry in the launch drop-down.

Data Explorer​

• Made credentials a required field in the Add data repository form.

Pipelines​

• Refined workflow_updated events that contain no diff.
• Prevented duplicate GitHub credentials across PAT and GitHub App types.
• Resolved file paths to the most recent lineage record.

Feature updates and improvements​

Language features​

• Validated module spec against JSON schema by @pditommaso in #7094
• Updated guidelines for strict parser by @bentsherman in #7134

General​

• Honored token field in BitbucketServerRepositoryProvider by @jorgee in #7120
• Picked up force-pushed branches in multi-revision repo strategy by @jorgee in #7103
• Tightened CI security and removed dead code in workflows by @ewels in #7139
• Updated GitHub Actions with security updates by @ewels in #7138

Dependencies​

• Pinned python to 3.14.5 by @seqeralabs-renovate in #7152
• Bumped nf-azure@1.22.4 by @pditommaso in 2bcc6e8c
• Bumped nf-k8s@1.5.3 by @pditommaso in b2ea7492
• Bumped nf-seqera@0.20.0 by @pditommaso in 4d55e81e

Bug fixes​

Language features​

• Fixed module run to allow optional path inputs by @bentsherman in #7163
• Fixed destructured record input in module run by @bentsherman in #7164
• Fixed function calls in typed process outputs by @bentsherman in #7148
• Fixed strict parser to include params refs in task hash by @bentsherman in #7165
• Normalized TaskPath to Path in typed process outputs by @stekaz in #7090

Azure​

• Fixed Azure rnaseq-nf test by @bentsherman in #7143

General​

• Released HTTP sockets when reading HTTP attributes to avoid 503 throttling by @jorgee in f2b0284e

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.2

Feature updates and improvements​

General​

• Demoted 'Request processing' log to trace in RegistryProxyService by @pditommaso in #1047

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.5...v1.33.6

Feature updates and improvements​

General​

• Ported Wave CI to push to internal ECR (SEC-1395) by @ShahzebMahmood in #1039
• Embedded OpenAPI spec and Swagger UI in main Wave container by @pditommaso in #1043
• Used addIfLess for JWT refresh timer scheduling by @pditommaso in #1045

Dependencies​

• Updated node dependency to v24 by @seqeralabs-renovate in #1023

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.4...v1.33.5